GgaEX0012880 @ galGal3
Exon Skipping
Gene
ENSGALG00000008819 | LRSAM1
Description
NA
Coordinates
chr17:1941204-1943953:-
Coord C1 exon
chr17:1943832-1943953
Coord A exon
chr17:1942380-1942470
Coord C2 exon
chr17:1941204-1941334
Length
91 bp
Sequences
Splice sites
3' ss Seq
CTGTGTGTTCTGTTTTGGAGACA
3' ss Score
0.11
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GCAACAAGCTGAGGGAGCTGCCTGCTACAGTGAGCGGTCTGCGGAGTTTGCGCACTCTGAATGTCAGTGAGAACCTGCTGCAGGAACTGCCAAGAGTGCTGGCTCACGTCCGCATGCTGGAG
Seq A exon
ACACTGACCCTGGATGCTTCTTCCATGACCTACCCATCACCTGATATTTGCAGTGCAGGTACAGAGTCCATTCAGCAGTTCCTCTGCAAAG
Seq C2 exon
AGTGTGGAATTGCATACTACCCTCCCTCAGAGTACGTGCTCCCTGCACTGGAGAGTGATGGAGGAGAAACATCAGTGGATGGGGTGGACAGGACAGTGCACAAATACTTGGAGGAGGAGAGCAAGTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008819-'7-10,'7-9,8-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.250
Domain overlap (PFAM):
C1:
PF127992=LRR_4=PD(77.8=85.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGCACTCTGAATGTCAGTGA
R:
TTTGTGCACTGTCCTGTCCAC
Band lengths:
177-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]