BtaEX6046238 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012844 | LRSAM1
Description
Bos taurus leucine rich repeat and sterile alpha motif containing 1 (LRSAM1), mRNA. [Source:RefSeq mRNA;Acc:NM_001075296]
Coordinates
chr11:98204061-98207833:+
Coord C1 exon
chr11:98204061-98204182
Coord A exon
chr11:98205021-98205111
Coord C2 exon
chr11:98207703-98207833
Length
91 bp
Sequences
Splice sites
3' ss Seq
GGGTCTCCTTGTGTCTGCAGACC
3' ss Score
9.15
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
ACAACAGGCTGAAGGAGCTGCCGGACACGCTGGGGGAGCTTCGGAGCCTGCGCACTCTGGACATCAGTGAGAACGAGATTCAGAGGCTGCCCCGGATGCTGGCACATGTCCGAACCCTGGAG
Seq A exon
ACCCTGAGCCTCGACGCGTTGTCCATGGTCTACCCCCCGCAGGAGGTGTGCGGTGCTGGCACTGAGGCCATTCAGCAGTTCCTCTGCAAAG
Seq C2 exon
AGTCGGGGCTGGAGTACTACCCCCCTTCTCAGTACCTGCTGCCGGTCCTGGAGCAGGATGGGGCTGAGAACTCCCTGGACAGCCCCGACGGGCCCACCGACAGACTCTGCAGGGAGGAGGAGGAGTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012844-'11-12,'11-10,12-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.568
Domain overlap (PFAM):
C1:
PF127992=LRR_4=PD(77.8=85.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACGAGATTCAGAGGCTGCC
R:
CTCCTCCCTGCAGAGTCTGTC
Band lengths:
171-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]