MmuEX0027174 @ mm9
Exon Skipping
Gene
ENSMUSG00000026792 | Lrsam1
Description
leucine rich repeat and sterile alpha motif containing 1 [Source:MGI Symbol;Acc:MGI:2684789]
Coordinates
chr2:32803311-32809005:-
Coord C1 exon
chr2:32808884-32809005
Coord A exon
chr2:32806613-32806703
Coord C2 exon
chr2:32803311-32803441
Length
91 bp
Sequences
Splice sites
3' ss Seq
GGGGTTCCCTGTGTCCACAGACG
3' ss Score
9.2
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
ACAACAAGCTGAAGGAGCTTCCTGACACCCTGGGGGAGCTGCGGAGCCTGCGGACACTCGACATTAGTGAGAACGAGATTCAGAGACTTCCCCAGATGCTGGCGCACGTGCGGACCCTGGAG
Seq A exon
ACGCTGAGCCTCAACGCCTTGGCAATGGTCTACCCCCCACCAGAGGTGTGTGGCGCTGGCACTGCGGCCGTGCAGCAGTTCCTCTGCAAAG
Seq C2 exon
AGTCAGGACTGGACTATTACCCACCTTCTCAGTACCTGCTGCCAGTCCTGGAGCAAGATGGAGCAGAGAACACCCAAGACAGCCCCGATGGACCCGCAAGCCGATTCTCCAGGGAGGAGGCTGAATGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026792_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.591
Domain overlap (PFAM):
C1:
PF127992=LRR_4=PD(79.5=85.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGAGACTTCCCCAGATGCT
R:
CATTCAGCCTCCTCCCTGGA
Band lengths:
170-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: