HsaEX0037164 @ hg38
Exon Skipping
Gene
ENSG00000127603 | MACF1
Description
microtubule-actin crosslinking factor 1 [Source:HGNC Symbol;Acc:HGNC:13664]
Coordinates
chr1:39310831-39316529:+
Coord C1 exon
chr1:39310831-39311000
Coord A exon
chr1:39315513-39315691
Coord C2 exon
chr1:39316391-39316529
Length
179 bp
Sequences
Splice sites
3' ss Seq
GTGTGTCTTGTTCCTGGCAGCAC
3' ss Score
8.44
5' ss Seq
TAAGTGAGT
5' ss Score
6.43
Exon sequences
Seq C1 exon
AGGACAAAGAGGAGACTGTGGCCAAGATGTACATTTCAGAGTTGAAGAACATCCGGCTACGCCTGGAGGAGTATGAACAGAGGGTGGTCAAACGAATTCAGTCTCTAGCCAGCTCTAGGACTGACAGAGATGCCTGGCAGGACAATGCATTAAGGATTGCAGAGCAAGAG
Seq A exon
CACACCCAGGAGGATTTACAGCAATTGAGGTCAGACTTGGATGCAGTTTCTATGAAATGTGACAGCTTTCTCCATCAGTCTCCATCTAGTTCAAGTGTCCCAACTCTGCGCTCAGAACTGAATCTGCTGGTGGAGAAGATGGACCATGTCTATGGTCTCTCTACTGTATATCTGAATAA
Seq C2 exon
GTTAAAGACAGTTGATGTTATAGTACGTAGCATACAGGATGCTGAACTCTTGGTCAAAGGTTATGAGATTAAGCTGAGTCAAGAAGAAGTAGTACTGGCAGATCTCTCAGCTCTGGAGGCCCATTGGTCGACATTACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000127603_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.035 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGAAGAACATCCGGCTACGC
R:
GCCTCCAGAGCTGAGAGATCT
Band lengths:
249-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development