DreEX6073696 @ danRer10
Exon Skipping
Gene
ENSDARG00000028533 | macf1a
Description
microtubule-actin crosslinking factor 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3606]
Coordinates
chr19:35574862-35577946:-
Coord C1 exon
chr19:35577780-35577946
Coord A exon
chr19:35576741-35576919
Coord C2 exon
chr19:35574862-35575000
Length
179 bp
Sequences
Splice sites
3' ss Seq
AAACTTTTGTGGTGTTGCAGAAG
3' ss Score
6.75
5' ss Seq
AAAGTTAGT
5' ss Score
4.24
Exon sequences
Seq C1 exon
TGGAGAAGGATGAGTTGGCATCTCGTGCTTACCTGTCAGAGCTTCAGAGCATCAAGTCTCACCTGGAGGATGCGGAGAGCAGACTGATGCGTGGCATACAGACTCCACATCCCAGTACATTATCAGGAGATGCTGCAGACAGCGCTGTTCATATAGCAGAGCAAGAG
Seq A exon
AAGCTCCAGCAGGATCTGAAAGGTCTTCAGTCAGATTTGGGTGAAGTGTCTCGTCGCTGCGTGAGCTTCTTTGAGGAGAAACCTACATCTTCCAGTGTGCCTGTCCTGCGGTCAGAGCTCAACCTGGCTGTAGAGCACGTAGAGAAACTCAACTCCCTCTCTTCTGTATATCTGCAAAA
Seq C2 exon
ACTGAAGACAGTAGATGTGTTGATGAAAAGCCTGCAGGCGGCAGAAAGTCAGGTCAGAAAGTATGAGAGTCGACTGAGTGAAGAGGACATCGTGCCTGCAGATACTGCAGCAATCCAAGCCTTAGGAGAGCAGTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000028533-'31-36,'31-35,32-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=0.033 C2=0.043
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0043516=Spectrin=PU(36.8=89.4)

Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGTGCTTACCTGTCAGAGCT
R:
CAGGCACGATGTCCTCTTCAC
Band lengths:
243-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]