GgaEX6025277 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1C245]
Coordinates
chr23:5334494-5335371:+
Coord C1 exon
chr23:5334494-5334663
Coord A exon
chr23:5334875-5335053
Coord C2 exon
chr23:5335233-5335371
Length
179 bp
Sequences
Splice sites
3' ss Seq
TTCTCTCCTTCCTCCCGCAGCGC
3' ss Score
12.75
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
AAGACAAGGACGAGACAGTTGCCAGGACATACCTCTCTGAGCTCCAGAACATCCGCCTGCGCCTGGAGGAGTGCGAGCAGAGGCTCGTGAGCCGCATCCAATCCCCCAGCAGCACCCGAGCGGATGGTGACAGCATCCAGGAGAACACCATCCGCATCGCTGAGCAGGAG
Seq A exon
CGCATGCAGGAGGATCTGCAGCAGCTGAAGTCCGACCTGCGCTGCGTTTCGGAGCGCTGCTACAGCTTCCTCAACAGAGCGCCCGGCGGCCCCAGCACACCGCGCCTGCGGTCGGAGCTCGACCTGGTGGTGAACAAGATGGAGCAGACGTACGGGCTGTCCTCTGTCTACCTGGACAA
Seq C2 exon
GCTGAAGACCGTTGATATTATCATTCGTAACACCCAAGGAGCAGAGTCTTTGGTGAAGGGATATGAGGTGAAGCTGAGCCAGGAGGAGGCTGTCCCGGCCGACCTGACAGCGATTCAGGCGCACAGAAGTGCCCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003693-'37-39,'37-36,38-39=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.456 A=0.167 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAAGGACGAGACAGTTGCC
R:
CCTGGCTCAGCTTCACCTCAT
Band lengths:
251-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]