HsaEX0038906 @ hg19
Exon Skipping
Gene
ENSG00000165055 | METTL2B
Description
methyltransferase like 2B [Source:HGNC Symbol;Acc:18272]
Coordinates
chr7:128116783-128119567:+
Coord C1 exon
chr7:128116783-128116929
Coord A exon
chr7:128117136-128117227
Coord C2 exon
chr7:128119212-128119567
Length
92 bp
Sequences
Splice sites
3' ss Seq
TGCCCGTTTGATTTTCTCAGGGA
3' ss Score
8.56
5' ss Seq
AAGGTGCGC
5' ss Score
9.05
Exon sequences
Seq C1 exon
GCGTTACGGAAAGTGAAGTGTTTCCGGCTCCGGTGTCATGGCCGGCTCCTACCCTGAAGGTGCACCTGCAATCCTCGCCGATAAGAGGCAGCAGTTCGGAAGCCGGTTCCTGAGCGATCCGGCGCGCGTCTTCCACCACAATGCCTG
Seq A exon
GGACAATGTGGAGTGGTCGGAAGAGCAAGCCGCGGCGGCGGAGAGAAAAGTCCAGGAGAACAGTATCCAGCGGGTGTGCCAGGAGAAACAAG
Seq C2 exon
TTGATTATGAGATCAATGCCCACAAATACTGGAATGACTTCTACAAAATCCACGAAAATGGGTTTTTCAAGGATAGACATTGGCTTTTTACCGAATTCCCTGAGCTGGCACCTAGCCAAAATCAAAATCATTTGAAGGATTGGTTCTTGGAGAACAAGAGTGAAGTATGTGAATGTAGAAACAATGAGGATGGACCTGGTTTAATAATGGAAGAACAGCACAAGTGTTCTTCGAAGAGCCTTGAACATAAAACACAGACACCTCCTGTGGAGGAGAATGTAACTCAGAAAATTAGTGACCTGGAAATTTGTGCTGATGAGTTTCCTGGATCCTCAGCCACCTACCGAATACTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165055_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.106 A=0.625 C2=0.114
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF134891=Methyltransf_23=PU(15.9=25.2)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGATAAGAGGCAGCAGTTCGG
R:
TAGGTGCCAGCTCAGGGAATT
Band lengths:
183-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)