HsaEX0057542 @ hg19
Exon Skipping
Gene
ENSG00000107290 | SETX
Description
senataxin [Source:HGNC Symbol;Acc:445]
Coordinates
chr9:135161810-135164038:-
Coord C1 exon
chr9:135163937-135164038
Coord A exon
chr9:135163623-135163738
Coord C2 exon
chr9:135161810-135161881
Length
116 bp
Sequences
Splice sites
3' ss Seq
TTATTTGTTATTTTTATTAGAAA
3' ss Score
6.57
5' ss Seq
CAGGTATCT
5' ss Score
7.33
Exon sequences
Seq C1 exon
GAAACTGTGGAGATATAAATTTAGTACGACTGGGTCCAGAAAAGTCTATTAATAGTGAGGTTCTAAAGTTCAGTTTGGACAGCCAAGTAAACCACAGAATGA
Seq A exon
AAAAAGAGTTACCTTCTCATGTTCAGGCGATGCATAAAAGAAAGGAATTTCTAGATTATCAGCTGGATGAGCTTTCCCGGCAGCGAGCTCTATGCCGAGGTGGACGGGAAATACAG
Seq C2 exon
AGGCAAGAATTAGATGAAAACATTTCCAAAGTTTCTAAGGAAAGGCAGGAACTTGCTTCTAAAATTAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107290-'21-24,'21-22,22-24
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=0.231 C2=0.464
Domain overlap (PFAM):
C1:
PF130861=AAA_11=FE(11.9=100)
A:
PF130861=AAA_11=FE(13.3=100)
C2:
PF130861=AAA_11=FE(8.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGATATAAATTTAGTACGACTGGG
R:
TTAATTTTAGAAGCAAGTTCCTGCCT
Band lengths:
162-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)