MmuEX6100057 @ mm9
Exon Skipping
Gene
ENSMUSG00000043535 | Setx
Description
senataxin [Source:MGI Symbol;Acc:MGI:2443480]
Coordinates
chr2:29016992-29018282:+
Coord C1 exon
chr2:29016992-29017093
Coord A exon
chr2:29017270-29017385
Coord C2 exon
chr2:29018254-29018282
Length
116 bp
Sequences
Splice sites
3' ss Seq
GATTTTTAAATTTATATTAGAAA
3' ss Score
4.46
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
GAAACTGTGGAGATATAAATTTAGTACGACTAGGTCCAGAAAAGTCTATTAATACAGAGGTCTTAAAATTCAGTTTGGACAGCCAAGTCAACCATAGAATGA
Seq A exon
AAAAAGACTTGCCTTCTCATATTCAAGAAATGCTTAGAAGAAAAGAAATTCTAGATGCTCAACTTGATGAGCTTTCTCGTCAGCGAGCTCTGTGCCGAGGTGGGCGGGAGATGCAG
Seq C2 exon
GATTGTTGTGTACCTTAGACATGAATGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043535-'30-27,'30-26,31-27=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=0.167 C2=0.000
Domain overlap (PFAM):
C1:
PF130861=AAA_11=FE(11.9=100)
A:
PF130861=AAA_11=FE(13.3=100)
C2:
PF130861=AAA_11=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATTTAGTACGACTAGGTCCAGAA
R:
TCATTCATGTCTAAGGTACACAACA
Band lengths:
114-230
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: