BtaEX6046965 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000024822 | SETX
Description
senataxin [Source:HGNC Symbol;Acc:HGNC:445]
Coordinates
chr11:102392904-102396046:-
Coord C1 exon
chr11:102395945-102396046
Coord A exon
chr11:102395641-102395756
Coord C2 exon
chr11:102392904-102392975
Length
116 bp
Sequences
Splice sites
3' ss Seq
TCTTTTTATTTTCTTTAAAGAAA
3' ss Score
7.21
5' ss Seq
CAGGTATCT
5' ss Score
7.33
Exon sequences
Seq C1 exon
GAAACTGTGGAGATATAAATTTAGTACGTCTAGGTCCAGAAAAGTCTATTAATAATGAGGTCCTGAAATTCAGTTTGGACAGTCAAGTTAACCACAGAATGA
Seq A exon
AAAAAGACTTACCGTCTCATGTTCAGGAGATGCACAAAAGAAAGGAATTTCTTGATCATCAACTTGATGAACTTTCCCGCCAGCGTGCTTTATGCCGAGGTGGAAGGGAATCGCAG
Seq C2 exon
AGGCAAGAATTAGATGGAAAAATTGCCAGAGTTTCAAAAGAAAGGCAGGAGCTTGCTTCTAAAATTAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000024822-'24-23,'24-20,25-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.171 A=0.419 C2=0.500
Domain overlap (PFAM):
C1:
PF130861=AAA_11=FE(11.9=100)
A:
PF130861=AAA_11=FE(13.3=100)
C2:
PF130861=AAA_11=FE(8.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAAATTTAGTACGTCTAGGTCCAGA
R:
AATTTTAGAAGCAAGCTCCTGCCT
Band lengths:
154-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]