RnoEX6016196 @ rn6
Exon Skipping
Gene
ENSRNOG00000013491 | Setx
Description
senataxin [Source:RGD Symbol;Acc:1565575]
Coordinates
chr3:7713236-7714844:+
Coord C1 exon
chr3:7713236-7713337
Coord A exon
chr3:7713517-7713632
Coord C2 exon
chr3:7714773-7714844
Length
116 bp
Sequences
Splice sites
3' ss Seq
AATTTTAAATTTTGTATTAGAAA
3' ss Score
4.6
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GAAACTGTGGAGATATAAATTTAGTAAGACTGGGTCCAGAAAAGTCTATTAATACAGAGGTCCTAAAATTCAGTTTGGATAGCCAAGTCAGCCATAGAATGA
Seq A exon
AAAAAGACTTGCCTTCTCATATTCAAGAAATGCTTAGAAGAAAAGAAATTCTAGATGCTCAACTTGATGAGCTTTCTCGTCAGCGAGCTCTGTGTCGAGGTGGGCGGGAGATGCAG
Seq C2 exon
AGGCAAGAATTAGATGAACACATTGTCATAGTTTCAAAAGAAAGGCAAGAACTTGCTTCAAAAATTAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013491-'20-19,'20-17,21-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=0.179 C2=0.167
Domain overlap (PFAM):
C1:
PF130861=AAA_11=FE(11.9=100)
A:
PF130861=AAA_11=FE(13.3=100)
C2:
PF130861=AAA_11=FE(8.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTAGTAAGACTGGGTCCAGAAAAGT
R:
GCAAGTTCTTGCCTTTCTTTTGA
Band lengths:
138-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]