DreEX6082824 @ danRer10
Exon Skipping
Gene
ENSDARG00000022996 | setx
Description
senataxin [Source:ZFIN;Acc:ZDB-GENE-070402-1]
Coordinates
chr21:3793868-3796015:+
Coord C1 exon
chr21:3793868-3793969
Coord A exon
chr21:3794060-3794172
Coord C2 exon
chr21:3795944-3796015
Length
113 bp
Sequences
Splice sites
3' ss Seq
TCTTTTTTTCATTTGCATAGAGC
3' ss Score
7.56
5' ss Seq
GAGGTAATG
5' ss Score
8.73
Exon sequences
Seq C1 exon
GTAATTGTGGTGACATAAACCTGGTAAGACTGGGAAATGAAAGAACCATCTCAAAGTCACTAAAACCTTTCAGCCTCGACCACCAGACTAAAGCAAGAGCTC
Seq A exon
AGCGAGCCCAGCAAACTGTAGAATCTGATGTACACAGGCGGAAGGAGCAACTGGACCAGATGATTGAAAATCTCTCTCATCAATGTGCAAAAACCCAGAAGAATTCTACTGAG
Seq C2 exon
TTCAAAAATTTATTGGAGCAGAAGAAGCAGTTTCTGAAAGAGAGAGAAGGACTGAGTCGGCAGATTAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000022996-'19-19,'19-18,20-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.257 A=0.395 C2=0.089
Domain overlap (PFAM):
C1:
PF130861=AAA_11=FE(11.9=100)
A:
PF130861=AAA_11=FE(13.0=100)
C2:
PF130861=AAA_11=FE(8.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTGGTGACATAAACCTGGT
R:
CTCTTTAATCTGCCGACTCAGTCC
Band lengths:
170-283
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]