HsaEX0061136 @ hg19
Exon Skipping
Gene
ENSG00000104450 | SPAG1
Description
sperm associated antigen 1 [Source:HGNC Symbol;Acc:11212]
Coordinates
chr8:101237401-101245765:+
Coord C1 exon
chr8:101237401-101237567
Coord A exon
chr8:101243384-101243516
Coord C2 exon
chr8:101245639-101245765
Length
133 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTTTTTGTCCCATAGATG
3' ss Score
11.01
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
Exon sequences
Seq C1 exon
GCTATCAAGAATTTTAATGGAGCTGGATGGACCAAATTGGCGGGAGAAGCTGTCACCTATTCCTGCTGTGCCTGCTTCTGTGCCACTGCAAGCTTGGCATCCGGCAAAAGAGATGATCTCAAAACAAGCAGGAGACTCCAGCAGCCATCGCCAGCAGGGCATCACAG
Seq A exon
ATGAAAAAACATTTAAAGCCCTTAAGGAAGAAGGAAATCAATGTGTAAATGACAAAAACTATAAAGACGCCCTCAGTAAATACAGCGAATGCTTAAAGATTAACAATAAGGAATGTGCCATATATACAAACAG
Seq C2 exon
AGCTCTCTGTTACTTGAAGCTGTGCCAGTTTGAAGAAGCAAAGCAGGACTGTGATCAGGCACTTCAGCTAGCTGATGGGAACGTGAAAGCCTTCTATAGACGAGCTCTGGCTCATAAAGGACTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000104450-'16-19,'16-17,19-19
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.275 A=0.088 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF134141=TPR_11=PU(61.8=93.3)
C2:
PF134141=TPR_11=PD(36.8=58.1),PF0051523=TPR_1=PU(41.2=32.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATTGGCGGGAGAAGCTGTC
R:
CCAGAGCTCGTCTATAGAAGGCT
Band lengths:
244-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)