GgaEX0023632 @ galGal3
Exon Skipping
Gene
ENSGALG00000016037 | SPAG1
Description
NA
Coordinates
chr2:134066786-134071096:+
Coord C1 exon
chr2:134066786-134066961
Coord A exon
chr2:134069469-134069610
Coord C2 exon
chr2:134070996-134071096
Length
142 bp
Sequences
Splice sites
3' ss Seq
GTGATCCTTTCGTTATGTAGGTG
3' ss Score
8.75
5' ss Seq
CAGGTAACG
5' ss Score
10.52
Exon sequences
Seq C1 exon
AATAACGAAGACTTTAATTGATCAAGATGGTTCTAGTTGGAGGGAAAAACTGCCACCGATTCCAGTTGTCCCTATTGCTGCTCAGCTAAACAGGTGGGATGGAGGAAACTTTACTTCAGAGGTTAAGCCAAAAAGTCCCACAGATATCAACAAAGAAGAACAGTTGCAGATGAATC
Seq A exon
GTGAGAAAGCTGAGGAAAAGTTCAGGACATTAAAAAATGAAGGGAATGATTTTGTGAAGAAGGGTAAATATGATGAAGCTGTAAATAAATACAGTGAATGCTTGAAGTTAAATACCAAGGACTGCACAATATACACTAACAG
Seq C2 exon
AGCTCTCTGTTACTTGAAACTGCATAAATATGAAGAGGCTAAGCAAGATTGTGATCATGTTCTTCAAATAGAAGATTGTAATATTAAAGCTTTTTACAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016037-'17-19,'17-17,18-19
Average complexity
S
Mappability confidence:
78%=50=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.350 A=0.125 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
PF134141=TPR_11=PU(60.0=87.5)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGAAGACTTTAATTGATCAAGATGG
R:
GAACATGATCACAATCTTGCTTAGCC
Band lengths:
234-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]