MmuEX6053253 @ mm10
Exon Skipping
Gene
ENSMUSG00000037617 | Spag1
Description
sperm associated antigen 1 [Source:MGI Symbol;Acc:MGI:1349387]
Coordinates
chr15:36221406-36227262:+
Coord C1 exon
chr15:36221406-36221566
Coord A exon
chr15:36224109-36224241
Coord C2 exon
chr15:36227136-36227262
Length
133 bp
Sequences
Splice sites
3' ss Seq
TTATTTTCTTGGTCCTATAGATG
3' ss Score
9.16
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
Exon sequences
Seq C1 exon
AATAGCACGAATCTTAACAGAGCTAGATGGATCAAAATGGCGGGAGAGACTGCCACCCATCCCAGCTGTACCCACATCTGAGCCACTGCGAGTTTGGCTCCCTGCTGCAGAGACCCCAGACCAAGATCCCTGTCCCAACAACTGCATGCCGAGCATCACAG
Seq A exon
ATGAAAAAATGTTTCAAGCCCTCAAGGAAGAAGGAAATCAACTTGTAAAGGACAAAAATTATAAAGATGCCATTAGTAAATACAATGAATGCTTAAAGATTAACAGCAAGGCATGTGCCATCTATACAAACAG
Seq C2 exon
GGCTCTCTGTTACCTGAAGCTGGGCCAGTTTGAAGAGGCAAAGCTGGACTGTGAGCAGGCGCTTCAGATAGACGGCGAGAATGTGAAAGCCAGCCACAGACTAGCGCTCGCCCAGAAAGGACTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037617-'24-25,'24-23,27-25
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.130 A=0.013 C2=0.154
Domain overlap (PFAM):
C1:
NO
A:
PF134141=TPR_11=PU(61.8=93.3)
C2:
PF134141=TPR_11=PD(36.8=58.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGGATCAAAATGGCGGGA
R:
GCTAGTCTGTGGCTGGCTTTC
Band lengths:
242-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types