RnoEX0084990 @ rn6
Exon Skipping
Gene
ENSRNOG00000010078 | Spag1
Description
sperm associated antigen 1 [Source:RGD Symbol;Acc:1310702]
Coordinates
chr7:75043642-75048492:+
Coord C1 exon
chr7:75043642-75043802
Coord A exon
chr7:75046170-75046302
Coord C2 exon
chr7:75048366-75048492
Length
133 bp
Sequences
Splice sites
3' ss Seq
TTATTTTATTGATCCCATAGATG
3' ss Score
8.69
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
Exon sequences
Seq C1 exon
AATAACAAGAATCTTAACAGAGCTAGATGGACCAAAATGGCGGGAGAGACTGCCCCCCATCCCGGCTGTGCCTGCATCTGAGCCTCTGAGAGTTTGGCACCCTGCTGCTGAGACCCCAGACCAAGATCCGTGTCCCAACAGCTGCACGCCCACCATCACAG
Seq A exon
ATGAAAAAATGTTTCAAGCCCTTAAGGAAGAAGGAAATCAACTTGTAAAGGACAAAAATTATAAAGACGCCATTAGTAAATACAACGAATGCTTAAAGATTAACAGCAAGGCATGTGCCATCTATACAAACAG
Seq C2 exon
GGCTCTCTGTTACTTGAAGCTGGGACAGTTTGAAGAGGCAAAGCTGGACTGTGACAAGGCACTTCAGATAGACAGCAAGAATGTGAAAGCCTCTTACAGACTCGAGCTCGCCCAGAAAGGACTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010078-'25-19,'25-18,26-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.244 A=0.007 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF134141=TPR_11=PU(61.8=93.3)
C2:
PF134141=TPR_11=PD(36.8=58.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCAAAATGGCGGGAGAGAC
R:
GGCGAGCTCGAGTCTGTAAGA
Band lengths:
244-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]