HsaEX0063569 @ hg19
Exon Skipping
Gene
ENSG00000170921 | TANC2
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 [Source:HGNC Symbol;Acc:30212]
Coordinates
chr17:61428611-61457187:+
Coord C1 exon
chr17:61428611-61428777
Coord A exon
chr17:61432144-61432751
Coord C2 exon
chr17:61457079-61457187
Length
608 bp
Sequences
Splice sites
3' ss Seq
CTCTCTCTCCATCTTTTTAGGAA
3' ss Score
12.23
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
AGAGAAAAATCCCAGATGAAGATTTCATCATTTTAATTGATGGATTAAATGAAGCAGAATTTCACAAACCGGATTATGGGGATACAATTGTATCGTTTCTGAGTAAAATGATCGGAAAGTTTCCTTCTTGGCTCAAACTAATTGTAACAGTTAGGACCAGTTTACAG
Seq A exon
GAAATTACCAAGCTGCTGCCTTTCCATAGGATTTTTTTGGATCGACTAGAAGAGAATGAAGCCATAGACCAGGACCTGCAGGCTTACATCCTGCACCGGATACACAGCAGCTCAGAGATCCAGAATAACATTTCACTTAATGGCAAAATGGACAATACTACATTTGGCAAACTCAGTTCTCATCTCAAGACCCTCAGTCAAGGGTCCTATCTATATCTGAAACTTACATTTGACCTCATAGAGAAAGGCTATCTAGTGTTAAAGAGCTCTAGCTACAAAGTAGTTCCTGTTTCGCTCTCAGAGGTTTATTTACTCCAGTGCAATATGAAGTTCCCAACCCAGTCTTCCTTTGACCGGGTGATGCCTCTCCTGAATGTGGCAGTGGCCTCTCTCCACCCACTGACTGATGAGCATATCTTCCAGGCCATCAATGCTGGGAGCATTGAAGGCACACTAGAATGGGAGGATTTTCAGCAGAGAATGGAGAACCTCTCCATGTTCCTAATCAAGCGCAGAGACATGACTCGTATGTTTGTACATCCTTCTTTTCGAGAATGGCTTATCTGGAGAGAAGAAGGAGAGAAAACCAAATTTCTCTGTGATCCGAG
Seq C2 exon
GAGTGGTCACACGTTACTTGCCTTCTGGTTTTCCCGCCAAGAGGGAAAACTAAACCGACAGCAGACTATTGAACTGGGACATCACATCCTCAAAGCACACATTTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170921_MULTIEX3-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF131911=AAA_16=PD(10.4=39.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGAAAAATCCCAGATGAAGATTTC
R:
AATGTGTGCTTTGAGGATGTGA
Band lengths:
270-878
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)