MmuEX0046258 @ mm10
Exon Skipping
Gene
ENSMUSG00000053580 | Tanc2
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 [Source:MGI Symbol;Acc:MGI:2444121]
Coordinates
chr11:105863917-105886466:+
Coord C1 exon
chr11:105863917-105864083
Coord A exon
chr11:105867196-105867774
Coord C2 exon
chr11:105886358-105886466
Length
579 bp
Sequences
Splice sites
3' ss Seq
AAGTTGCTGCCTTTCCATAGGAT
3' ss Score
8.37
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
AGAGAAAAATCCCAGATGAAGATTTCATCATTTTAATTGATGGATTAAATGAAGCAGAATTTCACAAACCGGATTATGGGGATACAATTGTATCATTTCTAAGTAAAATGATTGGAAATTTTCCTTCTTGGCTCAAACTAATTGTAACAGTTAGGACCAGTTTACAG
Seq A exon
GATTTTTTTGGATCGACTAGAAGAGAATGAAGCCATAGACCAGGACCTGCAGGCTTACATCCTGCACCGGATTCACAGCAGCTCAGAGATCCAGAATAACATCTCACTTAATGGCAAGATGGACAATACTACATTTGGCAAACTCAGTTCTCACCTCAAGACCCTCAGTCAAGGGTCATATCTATACCTGAAACTCACATTTGACCTCATAGAGAAAGGCTACCTAGTGCTAAAGAGTTCTAGCTACAAAGTCGTTCCTGTTTCGCTCTCTGAGGTTTATTTACTCCAGTGCAATATGAAGTTCCCAACTCAGTCTTCCTTTGACCGGGTGATGCCTCTCCTGAATGTGGCAGTAGCCTCTCTCCACCCACTTACGGATGAACATATTTTCCAGGCCATCAATGCTGGGAGCATTGAAGGCACACTAGAATGGGAAGACTTTCAACAAAGAATGGAGAACCTCTCCATGTTCCTCATCAAGCGCAGAGACATGACTCGGATGTTTGTGCATCCTTCTTTTCGAGAATGGCTTATCTGGAGAGAAGAAGGAGAGAAAACCAAATTTCTCTGTGATCCCAG
Seq C2 exon
GAGTGGCCACACATTACTTGCCTTCTGGTTCTCCCGCCAAGAGGGAAAACTAAACCGACAGCAGACTATTGAACTAGGACATCACATCCTCAAAGCACACATCTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000053580-'28-44,'28-43,29-44
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF131911=AAA_16=PD(11.2=42.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAAAAATCCCAGATGAAGATTTCA
R:
AGATGTGTGCTTTGAGGATGTGA
Band lengths:
270-849
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types