GgaEX1000099 @ galGal4
Exon Skipping
Description
NA
Coordinates
chr27:2592959-2605148:+
Coord C1 exon
chr27:2592959-2593125
Coord A exon
chr27:2593926-2594533
Coord C2 exon
chr27:2605040-2605148
Length
608 bp
Sequences
Splice sites
3' ss Seq
TCTTTTTTCTTTCTTTGCAGGAA
3' ss Score
13.55
5' ss Seq
TAGGTAAGC
5' ss Score
8.89
Exon sequences
Seq C1 exon
AGAGGAAGATCCCCGATGAAGATTTCATCATATTAATTGATGGTTTAAACGAGGCTGAATTTCACAAGCCAGATTATGGTGACACCATCGTATCATTCCTGAGCAAAATGATTGGGAAGTTCCCTTCCTGGCTGAAGCTCGTTGTGACCGTCAGGACAAGTCTACAG
Seq A exon
GAAATAATTAAGCTGTTGCCCTTCCACAGAATATTTTTGGATAGACTGGAAGAGAACGAAGCCATAGACCAGGACCTGCAGGCGTACATCCTGCACCGCATACACAGCAGCTCGGAGATCCAGAACAACATCTCACTGAACGGCAAGATGGACAACACCACCTTTGGCAAACTCAGCTCCCACCTCAAGACCTTGAGCCAAGGGTCCTACCTGTACCTGAAACTCACTTTTGATCTCATAGAGAAAGGATATCTAGTACTAAAAAGCTCCAGCTACAAAGTAGTCCCAGTGTCTCTGTCAGAAGTTTACCTGTTGCAGTGCAATATGAAGTTCCCAACACAGTCTTCCTTTGATCGGGTTATGCCTCTCTTGAATGTGGCAGTGGCATCTCTGCATCCTTTAACAGATGAGCATATTTTTCAGGCCATTAATGCAGGTAACATTGAGGGCACTTTGGAGTGGGATGACTTTCAGCAGAGGATGGAGAACCTTTCTATGTTTCTTATCAAACGTAGAGACATGACGCGAATGTTTGTTCATCCCTCTTTCCGCGAATGGCTCATTTGGAGAGAAGAAGGTGAAAAGACCAAGTTTCTTTGTGATCCTAG
Seq C2 exon
GAGTGGCCACACATTGCTTGCCTTCTGGTTTTCCCGTCAGGAAGGAAAACTCAACCGACAGCAAACGATCGAATTGGGACATCACATTCTCAAAGCACACATTTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000478-'21-13,'21-11,22-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGAAGATCCCCGATGAAGA
R:
AATGTGTGCTTTGAGAATGTGATGT
Band lengths:
270-878
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]