DreEX6016287 @ danRer10
Exon Skipping
Gene
ENSDARG00000079097 | tanc2a
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2a [Source:ZFIN;Acc:ZDB-GENE-060130-180]
Coordinates
chr3:22659079-22660125:+
Coord C1 exon
chr3:22659079-22659357
Coord A exon
chr3:22659477-22659808
Coord C2 exon
chr3:22660017-22660125
Length
332 bp
Sequences
Splice sites
3' ss Seq
ACACCAATGTTTTTATTTAGGTG
3' ss Score
9.05
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GATGTGACTCGTCCATTGCCATTCCACCGTATCTCTCTGGATCGTCTGGAAGAAAGTGATGCAATTGATTCTGACCTGCAAGGCTACATCCTTCACCGGCTTCATGCCAGCCAGGAGATTCAGAACAATGTGGCACTCAATGGCAAGCTGGACAACACAGCCTTCACAAAACTTAGCGCTCATCTCAAGAGTCTGAGCCGGGGCTCCTACCTGTACCTAAAGCTCACGCTGGACCTCATTGAGAAGGGTTACCTTGTGCTCAAAAGCTCTAGCTACAAG
Seq A exon
GTGGTTCCAGTGAATCTGGCTGAGGTCTACTTGCTGCAGCTGAACATGCGTTTCCCAACTCAGTCATCATTCGAGCGTGTTCTTCCACTGCTAAACGTGGCTGTAGCTTCTCTGCACCCATTAACCGATGAGCAGGCCTATGGTGCCGTGAACGCTGGTATGATGCGTGGAGCATCCATGGAGTGGGAGGATTTCCAGCAGAGATCTGAGCTTCTGTCGCCATTTCTGGTGAAACGACGTGATGGAACCCGCATGTTCATCCACCCCTCTTTCAGAGAGTGGCTCATCTGGAGAGAGGATGGAGAGAAGACCAAGTTTCTCTGTGACCCCAG
Seq C2 exon
GAGTGGCCACACACTGCTTGCATTCTGGTTTTCACGGCAAGACAGCAAGCTTAATCGACAACAGACCCTTGAACTTGGCCACCACATTCTCAAAGCTCACATCTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079097-'27-28,'27-27,28-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCGTCCATTGCCATTCCAC
R:
GGCCAAGTTCAAGGGTCTGTT
Band lengths:
353-685
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]