GgaEX1000099 @ galGal3
Exon Skipping
Gene
ENSGALG00000000478 | TANC2
Description
NA
Coordinates
chr27:2510311-2522500:+
Coord C1 exon
chr27:2510311-2510477
Coord A exon
chr27:2511278-2511885
Coord C2 exon
chr27:2522392-2522500
Length
608 bp
Sequences
Splice sites
3' ss Seq
TCTTTTTTCTTTCTTTGCAGGAA
3' ss Score
13.55
5' ss Seq
TAGGTAAGC
5' ss Score
8.89
Exon sequences
Seq C1 exon
AGAGGAAGATCCCCGATGAAGATTTCATCATATTAATTGATGGTTTAAACGAGGCTGAATTTCACAAGCCAGATTATGGTGACACCATCGTATCATTCCTGAGCAAAATGATTGGGAAGTTCCCTTCCTGGCTGAAGCTCGTTGTGACCGTCAGGACAAGTCTACAG
Seq A exon
GAAATAATTAAGCTGTTGCCCTTCCACAGAATATTTTTGGATAGACTGGAAGAGAACGAAGCCATAGACCAGGACCTGCAGGCGTACATCCTGCACCGCATACACAGCAGCTCGGAGATCCAGAACAACATCTCACTGAACGGCAAGATGGACAACACCACCTTTGGCAAACTCAGCTCCCACCTCAAGACCTTGAGCCAAGGGTCCTACCTGTACCTGAAACTCACTTTTGATCTCATAGAGAAAGGATATCTAGTACTAAAAAGCTCCAGCTACAAAGTAGTCCCAGTGTCTCTGTCAGAAGTTTACCTGTTGCAGTGCAATATGAAGTTCCCAACACAGTCTTCCTTTGATCGGGTTATGCCTCTCTTGAATGTGGCAGTGGCATCTCTGCATCCTTTAACAGATGAGCATATTTTTCAGGCCATTAATGCAGGTAACATTGAGGGCACTTTGGAGTGGGATGACTTTCAGCAGAGGATGGAGAACCTTTCTATGTTTCTTATCAAACGTAGAGACATGACGCGAATGTTTGTTCATCCCTCTTTCCGCGAATGGCTCATTTGGAGAGAAGAAGGTGAAAAGACCAAGTTTCTTTGTGATCCTAG
Seq C2 exon
GAGTGGCCACACATTGCTTGCCTTCTGGTTTTCCCGTCAGGAAGGAAAACTCAACCGACAGCAAACGATCGAATTGGGACATCACATTCTCAAAGCACACATTTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000478-'11-9,'11-8,12-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF131911=AAA_16=PD(11.6=44.6)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGAAGATCCCCGATGAAGA
R:
AATGTGTGCTTTGAGAATGTGATGT
Band lengths:
270-878
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]