MmuEX0046258 @ mm9
Exon Skipping
Gene
ENSMUSG00000053580 | Tanc2
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 [Source:MGI Symbol;Acc:MGI:2444121]
Coordinates
chr11:105725231-105747780:+
Coord C1 exon
chr11:105725231-105725397
Coord A exon
chr11:105728481-105729088
Coord C2 exon
chr11:105747672-105747780
Length
608 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTCCATCTGTTTTAGGAA
3' ss Score
12.2
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
AGAGAAAAATCCCAGATGAAGATTTCATCATTTTAATTGATGGATTAAATGAAGCAGAATTTCACAAACCGGATTATGGGGATACAATTGTATCATTTCTAAGTAAAATGATTGGAAATTTTCCTTCTTGGCTCAAACTAATTGTAACAGTTAGGACCAGTTTACAG
Seq A exon
GAAATTACCAAGTTGCTGCCTTTCCATAGGATTTTTTTGGATCGACTAGAAGAGAATGAAGCCATAGACCAGGACCTGCAGGCTTACATCCTGCACCGGATTCACAGCAGCTCAGAGATCCAGAATAACATCTCACTTAATGGCAAGATGGACAATACTACATTTGGCAAACTCAGTTCTCACCTCAAGACCCTCAGTCAAGGGTCATATCTATACCTGAAACTCACATTTGACCTCATAGAGAAAGGCTACCTAGTGCTAAAGAGTTCTAGCTACAAAGTCGTTCCTGTTTCGCTCTCTGAGGTTTATTTACTCCAGTGCAATATGAAGTTCCCAACTCAGTCTTCCTTTGACCGGGTGATGCCTCTCCTGAATGTGGCAGTAGCCTCTCTCCACCCACTTACGGATGAACATATTTTCCAGGCCATCAATGCTGGGAGCATTGAAGGCACACTAGAATGGGAAGACTTTCAACAAAGAATGGAGAACCTCTCCATGTTCCTCATCAAGCGCAGAGACATGACTCGGATGTTTGTGCATCCTTCTTTTCGAGAATGGCTTATCTGGAGAGAAGAAGGAGAGAAAACCAAATTTCTCTGTGATCCCAG
Seq C2 exon
GAGTGGCCACACATTACTTGCCTTCTGGTTCTCCCGCCAAGAGGGAAAACTAAACCGACAGCAGACTATTGAACTAGGACATCACATCCTCAAAGCACACATCTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000053580-'17-18,'17-17,18-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF131911=AAA_16=PD(14.0=55.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAAAAATCCCAGATGAAGATTTCA
R:
AGATGTGTGCTTTGAGGATGTGA
Band lengths:
270-878
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: