BtaEX6089493 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004249 | TANC2
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 [Source:HGNC Symbol;Acc:HGNC:30212]
Coordinates
chr19:48350327-48372338:+
Coord C1 exon
chr19:48350327-48350493
Coord A exon
chr19:48354426-48355033
Coord C2 exon
chr19:48372230-48372338
Length
608 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTCCATCTGTTTTAGGAA
3' ss Score
12.2
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
AGAGAAAAATTCCAGATGAAGATTTCATCATCTTAATTGATGGATTAAATGAAGCAGAATTTCACAAACCGGATTATGGGGATACAATTGTATCATTTCTGAGTAAAATGATTGGAAAATTTCCTTCCTGGCTCAAGCTAATTGTAACAGTTAGGACCAGTTTACAG
Seq A exon
GAAATTACCAAGCTGCTGCCTTTCCATAGGATTTTTTTGGATCGACTAGAAGAGAATGAAGCCATAGACCAGGACCTGCAGGCCTACATCCTGCACCGGATACATAGCAGCTCAGAGATCCAGAATAACATTTCTCTTAATGGCAAAATGGACAATACTACATTTGGCAAACTCAGTTCTCATCTCAAGACCCTCAGCCAAGGGTCCTATCTGTACCTGAAACTCACATTTGACCTCATAGAGAAAGGCTACCTAGTGTTAAAGAGCTCTAGCTACAAAGTAGTTCCTGTTTCGCTCTCTGAGGTTTATTTACTCCAGTGCAATATGAAGTTCCCAACCCAGTCTTCCTTTGACCGGGTGATGCCTCTCCTGAACGTGGCAGTGGCGTCTCTGCACCCACTGACTGATGAGCACATCTTCCAAGCCATCAACGCCGGCAGCATTGATGGCACGCTGGAATGGGAGGACTTCCAGCAGAGAATGGAGAACCTCTCAATGTTCCTAATCAAGCGCAGAGACATGACTCGCATGTTTGTACACCCTTCTTTTCGAGAGTGGCTTATCTGGAGAGAAGAAGGCGAGAAAACCAAATTTCTCTGTGATCCCAG
Seq C2 exon
GAGTGGTCACACATTACTTGCCTTCTGGTTTTCCCGCCAAGAGGGAAAACTAAACCGACAGCAGACAATTGAACTGGGACATCACATCCTCAAAGCACACATTTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004249-'15-16,'15-14,16-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF131911=AAA_16=PD(11.6=44.6)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATTAAATGAAGCAGAATTTCACA
R:
AATGTGTGCTTTGAGGATGTGA
Band lengths:
230-838
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]