RnoEX0088542 @ rn6
Exon Skipping
Gene
ENSRNOG00000052840 | Tanc2
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 [Source:RGD Symbol;Acc:1309285]
Coordinates
chr10:94055572-94079314:+
Coord C1 exon
chr10:94055572-94055738
Coord A exon
chr10:94058533-94059140
Coord C2 exon
chr10:94079206-94079314
Length
608 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTCCATCTATTTTAGGAA
3' ss Score
12.32
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
AGAGAAAAATCCCAGATGAAGATTTCATCATTTTAATTGATGGATTAAATGAAGCAGAATTTCACAAACCGGATTATGGGGATACAATTGTATCATTTCTAAGTAAAATGATTGGAAATTTTCCTTCTTGGCTCAAACTAATTGTAACAGTTAGGACCAGTTTACAG
Seq A exon
GAAATTACCAAGTTGCTGCCTTTCCATAGGATATTTTTGGATCGACTAGAAGAGAATGAAGCCATAGACCAGGACCTGCAGGCTTACATCCTGCACCGGATTCACAGCAGCTCAGAGATCCAGAATAACATCTCACTTAATGGCAAGATGGACAATACTACATTTGGCAAACTCAGTTCTCACCTCAAGACCCTCAGTCAAGGGTCATATCTATACCTGAAACTCACATTTGACCTCATAGAGAAAGGCTACCTAGTGCTAAAGAGTTCTAGCTACAAAGTCGTTCCTGTTTCACTCTCTGAGGTTTATTTACTCCAGTGCAATATGAAGTTCCCAACTCAGTCTTCCTTTGACCGGGTGATGCCTCTCCTGAATGTGGCAGTGGCCTCTCTCCACCCACTTACTGATGAACATATCTTCCAGGCCATCAATGCTGGGAGCATTGAAGGCACACTAGAATGGGAAGACTTCCAACAAAGAATGGAGAACCTCTCCATGTTCCTAATCAAGCGCAGAGACATGACTCGGATGTTTGTGCACCCTTCTTTTCGTGAATGGCTTATCTGGAGAGAAGAAGGAGAGAAAACCAAATTTCTCTGTGATCCCAG
Seq C2 exon
GAGTGGCCACACATTACTTGCCTTCTGGTTCTCCCGCCAAGAGGGAAAACTAAACCGACAGCAGACTATTGAACTAGGACATCACATCCTCAAAGCACACATCTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052840-'31-34,'31-31,32-34
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF131911=AAA_16=PD(10.4=39.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAAAAATCCCAGATGAAGATTTCA
R:
AGATGTGTGCTTTGAGGATGTGA
Band lengths:
270-878
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]