DreEX6016288 @ danRer10
Exon Skipping
Gene
ENSDARG00000079097 | tanc2a
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2a [Source:ZFIN;Acc:ZDB-GENE-060130-180]
Coordinates
chr3:22657809-22659808:+
Coord C1 exon
chr3:22657809-22657978
Coord A exon
chr3:22659079-22659357
Coord C2 exon
chr3:22659477-22659808
Length
279 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTCTCTTGGCCTTAGGAT
3' ss Score
11.61
5' ss Seq
AAGGTCAGG
5' ss Score
6.23
Exon sequences
Seq C1 exon
AGAGGAAGATTGCGTGTGAGGAGAATCTGATCATCTTGATTGACGGGCTGAATGAGGCAGAGTTCCACAAACCGGATTATGGAGAAACCATTGTTTCCTTTCTGTGCAAAACTATTGAGCGGTTTCCTCCCTGGCTAAAACTAGTGGTCACTGTCAGAACAACACTACAG
Seq A exon
GATGTGACTCGTCCATTGCCATTCCACCGTATCTCTCTGGATCGTCTGGAAGAAAGTGATGCAATTGATTCTGACCTGCAAGGCTACATCCTTCACCGGCTTCATGCCAGCCAGGAGATTCAGAACAATGTGGCACTCAATGGCAAGCTGGACAACACAGCCTTCACAAAACTTAGCGCTCATCTCAAGAGTCTGAGCCGGGGCTCCTACCTGTACCTAAAGCTCACGCTGGACCTCATTGAGAAGGGTTACCTTGTGCTCAAAAGCTCTAGCTACAAG
Seq C2 exon
GTGGTTCCAGTGAATCTGGCTGAGGTCTACTTGCTGCAGCTGAACATGCGTTTCCCAACTCAGTCATCATTCGAGCGTGTTCTTCCACTGCTAAACGTGGCTGTAGCTTCTCTGCACCCATTAACCGATGAGCAGGCCTATGGTGCCGTGAACGCTGGTATGATGCGTGGAGCATCCATGGAGTGGGAGGATTTCCAGCAGAGATCTGAGCTTCTGTCGCCATTTCTGGTGAAACGACGTGATGGAACCCGCATGTTCATCCACCCCTCTTTCAGAGAGTGGCTCATCTGGAGAGAGGATGGAGAGAAGACCAAGTTTCTCTGTGACCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079097-'26-27,'26-26,27-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF131911=AAA_16=PD(17.5=70.2)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGAATGAGGCAGAGTTCC
R:
CACGCATCATACCAGCGTTCA
Band lengths:
294-573
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]