HsaEX1003806 @ hg38
Exon Skipping
Gene
ENSG00000148513 | ANKRD30A
Description
ankyrin repeat domain 30A [Source:HGNC Symbol;Acc:HGNC:17234]
Coordinates
chr10:37248118-37262539:+
Coord C1 exon
chr10:37248118-37248240
Coord A exon
chr10:37261864-37261925
Coord C2 exon
chr10:37262483-37262539
Length
62 bp
Sequences
Splice sites
3' ss Seq
GTAGCCTCTTTCTTTTTCAGATA
3' ss Score
10.69
5' ss Seq
ACGGTAAGT
5' ss Score
11.81
Exon sequences
Seq C1 exon
ATTTTCACCGCTATGCCTCCTTTCACTCTGGGAGTCTTCCAGAGGTCTTGCACTCGGGAGAGCATGCTCAGGTTTCCCCAGCTCTACAAAATCACCCAGAATGCCAAAGACTTCAACACAAGG
Seq A exon
ATACTGTGTTGACCAGTGGTCATGCCACTGCCTGTTGATTTGTTGAAAATATTGTTTACACG
Seq C2 exon
TATGTTCTTGTTACTGATTGTCAGAAAGCTGGTTTTGAGACTGCAGCTTGGACTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148513_MULTIEX2-5/7=4-6
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCAGAGGTCTTGCACTCG
R:
GCTGCAGTCTCAAAACCAGCT
Band lengths:
135-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains