HsaEX1015842 @ hg38
Exon Skipping
Gene
ENSG00000261739 | GOLGA8S
Description
golgin A8 family member S [Source:HGNC Symbol;Acc:HGNC:44409]
Coordinates
chr15:23163829-23361456:+
Coord C1 exon
chr15:23163829-23164000
Coord A exon
chr15:23360229-23360318
Coord C2 exon
chr15:23361221-23361456
Length
90 bp
Sequences
Splice sites
3' ss Seq
TGAAACTTCTCACTCTTCAGCAG
3' ss Score
5.67
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
CTGAACCTCTGCCCCCGGAGCCCCCAGCAGTGCCCTCTGAGGTGGAGCTGCAGCACCTGAGGAAGGAACTAGAGAGAGTGGCAGGAGCGCTCCAGGCCCAGGTGGAGTACAATCAGCGCATAAGTCTCCTGAATGAGGGGCAAAAGGAGAGGCTTCGGGAGCAGGAGGAGAG
Seq A exon
CAGTTCTCCAGCCGCAGTAAAGCACGTACGGAGTGGAAGTTAGAGCAGTCCATGCGGGAGCAGGCACTGCTGAAAGCGCAGCTGACACAG
Seq C2 exon
CTGAACCTCTGCCCCCGGAGCCCCCAGCAGTGCCCTCTGAGGCGGAGCTGCAGCACCTGAGGAAGGAACTAGAGAGAGTGGCAGGAGCGCTCCAGGCCCAGGTGGAGTACAATCAGCGCATAAGTCTCCTGAATGAGGGGCAAAAGGAGAGGCTTCGGGAGCAGCAGGAGAGGCTTCCAGAGCAGGAGGAGAGGCTTCAGCAGCTGGCCGAGCCACAGAACAGCTTCAAGGAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000261739_MULTIEX1-7/9=C1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.414 C2=0.722
Domain overlap (PFAM):
C1:
NA
A:
PF150701=GOLGA2L5=PU(0.1=0.0)
C2:
PF150701=GOLGA2L5=PD(53.5=97.5),PF150701=GOLGA2L5=PU(0.7=1.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCTCCTGAATGAGGGGCAA
R:
ATGCGCTGATTGTACTCCACC
Band lengths:
171-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains