HsaEX1015845 @ hg38
Exon Skipping
Gene
ENSG00000261247 | GOLGA8T
Description
golgin A8 family member T [Source:HGNC Symbol;Acc:HGNC:44410]
Coordinates
chr15:30141802-30143681:+
Coord C1 exon
chr15:30141802-30142058
Coord A exon
chr15:30142314-30142382
Coord C2 exon
chr15:30143606-30143681
Length
69 bp
Sequences
Splice sites
3' ss Seq
GATTGCTTCTCTCTGTCCAGAAC
3' ss Score
8.02
5' ss Seq
GAGGTGAAG
5' ss Score
4.41
Exon sequences
Seq C1 exon
CTGAACCCTTGCCCCCGGAGCCCCCAGCAGTGCCCTCTGAGGTGGAGCTGCAGCACCTGAGGAAGGAACTAGAGAGAGTGGCAGGAGAGCTCCAGGCCCAGGTCAAAAAGAATCAGCGCATAAGTCTCCTGAACCAGCGACAAGAAGAGAGGATTCAGGAGCAGGAAGAGAGGCTTCGGAAGCAGGAGGAGAGGATTCAGGAGCAGCACAAGAGCCTTCAGCAGCTGGCCAAGCCACAGAGCGTCTTCGAGGAGCCG
Seq A exon
AACAATGAGAACAAGAACGCACTGCAGTTGGAGCAGCAAGTAAAGGAGCTACAGGAGAAGCTTGGCGAG
Seq C2 exon
GAGCACCTGGAAGCTGCCAGCCAGCAGAACCAGCAGCTAACGGCCCAGCTGAGCCTCATGGCTCTCCCTGGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000261247_MULTIEX1-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.837 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF150701=GOLGA2L5=PD(55.3=96.5),PF150701=GOLGA2L5=PU(4.1=7.0)
A:
PF150701=GOLGA2L5=FE(15.2=100)
C2:
PF150701=GOLGA2L5=FE(17.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTCCTGAACCAGCGACAAG
R:
GTTAGCTGCTGGTTCTGCTGG
Band lengths:
175-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains