HsaEX1040585 @ hg38
Exon Skipping
Gene
ENSG00000114126 | TFDP2
Description
transcription factor Dp-2 [Source:HGNC Symbol;Acc:HGNC:11751]
Coordinates
chr3:141959674-141963963:-
Coord C1 exon
chr3:141963812-141963963
Coord A exon
chr3:141962966-141963172
Coord C2 exon
chr3:141959674-141959840
Length
207 bp
Sequences
Splice sites
3' ss Seq
CATGAAAAAGTTTCTCTCAGTGG
3' ss Score
-1.87
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
CAAATCGCTTTCAAAAACCTGGTACAGAGAAATCGACAAAATGAGCAGCAAAACCAGGGCCCGCCGGCTCTGAACTCTACCATTCAGCTGCCATTCATAATCATCAATACAAGCAGAAAAACAGTCATAGATTGCAGCATCTCCAGTGACAA
Seq A exon
TGGTCTTCAGGCTGTGACCAGTACCATAAAAGAGTTAAGAGTATATATAGGGTGCAGAGTGAGACGGATCCATGTACCGCTTATGGCTCCCCCACTTCGCTGCTGCAAAGCTCTGTTTTCTCAAGAACAAATAGGAATGATACTGGGTCCCCTATGACTTCCCAGCCTTGTGAGGATTAAATGAGTTAATGTCTATAATGACTTGAG
Seq C2 exon
GTTTGAGTATCTTTTCAATTTTGACAACACCTTTGAGATCCATGATGACATAGAAGTACTAAAGCGGATGGGAATGTCGTTTGGCCTGGAGTCAGGCAAATGCTCTCTGGAGGATCTGAAACTTGCGAAATCCCTGGTGCCAAAGGCTTTAGAAGGTTATATCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000114126_MULTIEX1-18/20=17-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.255 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF087815=DP=FE(34.7=100)
A:
PF087815=DP=PD(5.8=9.4)
C2:
PF087815=DP=FE(38.9=100)
Main Inclusion Isoform:
ENST00000467072fB27949
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGCTTTCAAAAACCTGGTACA
R:
CCTTTGGCACCAGGGATTTCG
Band lengths:
294-501
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains