HsaEX6002401 @ hg38
Exon Skipping
Gene
ENSG00000149480 | MTA2
Description
metastasis associated 1 family member 2 [Source:HGNC Symbol;Acc:HGNC:7411]
Coordinates
chr11:62598522-62600689:-
Coord C1 exon
chr11:62600622-62600689
Coord A exon
chr11:62600166-62600259
Coord C2 exon
chr11:62598522-62598639
Length
94 bp
Sequences
Splice sites
3' ss Seq
TGTTTTTTTCCTCCCCTTAGACT
3' ss Score
11.35
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
Exon sequences
Seq C1 exon
ATTACGTCTATTTTGAGAACTCTTCCAGCAATCCTTACCTGGTTAGACGGATTGAGGAGCTCAACAAG
Seq A exon
ACTGCAAATGGAAATGTGGAGGCAAAGGTTGTCTGTCTTTTCCGGCGCAGGGACATTTCTAGTAGCCTCAACAGCCTGGCTGATAGTAATGCCA
Seq C2 exon
GGGAGTTTGAAGAGGAATCAAAGCAGCCAGGGGTGTCTGAGCAGCAGCGCCATCAACTGAAGCACCGGGAACTTTTTCTTTCTCGGCAATTTGAATCATTACCAGCCACCCACATACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000149480_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=0.562 C2=0.575
Domain overlap (PFAM):
C1:
PF0142613=BAH=FE(15.6=100)
A:
PF0142613=BAH=FE(22.0=100)
C2:
PF0142613=BAH=FE(27.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTTCCAGCAATCCTTACCTGG
R:
CGTATGTGGGTGGCTGGTAAT
Band lengths:
167-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains