MmuEX6031364 @ mm10
Exon Skipping
Gene
ENSMUSG00000071646 | Mta2
Description
metastasis-associated gene family, member 2 [Source:MGI Symbol;Acc:MGI:1346340]
Coordinates
chr19:8943465-8945873:+
Coord C1 exon
chr19:8943465-8943532
Coord A exon
chr19:8944013-8944106
Coord C2 exon
chr19:8945756-8945873
Length
94 bp
Sequences
Splice sites
3' ss Seq
GGTTTTTCTCCCTCCTTTAGACT
3' ss Score
9.47
5' ss Seq
CTCGTGAGT
5' ss Score
8.41
Exon sequences
Seq C1 exon
ATTACGTCTATTTTGAGAACTCCTCCAGCAATCCTTACCTGGTTAGACGGATTGAGGAGCTCAATAAG
Seq A exon
ACTGCAAATGGAAATGTGGAAGCAAAGGTTGTCTGTCTTTTCCGGCGAAGGGATATTTCTAGTAGCCTCAACAGCTTGGCTGACAGTAATGCTC
Seq C2 exon
GGGAGTTTGAGGAGGAATCAAAACAGCCAGGGGTCTCCGAGCAGCAGAGACATCAACTGAAGCACCGAGAGCTTTTTCTTTCTCGGCAGTTTGAATCATTACCAGCCACCCACATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000071646-'5-12,'5-6,6-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=0.375 C2=0.375
Domain overlap (PFAM):
C1:
PF0142613=BAH=FE(15.6=100)
A:
PF0142613=BAH=FE(22.0=100)
C2:
PF0142613=BAH=FE(27.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGAACTCCTCCAGCAATCCT
R:
TGTGGGTGGCTGGTAATGATT
Band lengths:
169-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types