HsaEX6002401 @ hg19
Exon Skipping
Gene
ENSG00000149480 | MTA2
Description
metastasis associated 1 family, member 2 [Source:HGNC Symbol;Acc:7411]
Coordinates
chr11:62365994-62368161:-
Coord C1 exon
chr11:62368094-62368161
Coord A exon
chr11:62367638-62367731
Coord C2 exon
chr11:62365994-62366111
Length
94 bp
Sequences
Splice sites
3' ss Seq
TGTTTTTTTCCTCCCCTTAGACT
3' ss Score
11.35
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
Exon sequences
Seq C1 exon
ATTACGTCTATTTTGAGAACTCTTCCAGCAATCCTTACCTGGTTAGACGGATTGAGGAGCTCAACAAG
Seq A exon
ACTGCAAATGGAAATGTGGAGGCAAAGGTTGTCTGTCTTTTCCGGCGCAGGGACATTTCTAGTAGCCTCAACAGCCTGGCTGATAGTAATGCCA
Seq C2 exon
GGGAGTTTGAAGAGGAATCAAAGCAGCCAGGGGTGTCTGAGCAGCAGCGCCATCAACTGAAGCACCGGGAACTTTTTCTTTCTCGGCAATTTGAATCATTACCAGCCACCCACATACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000149480-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.062 C2=0.375
Domain overlap (PFAM):
C1:
PF0142613=BAH=FE(15.6=100)
A:
PF0142613=BAH=FE(22.0=100)
C2:
PF0142613=BAH=FE(27.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTTCCAGCAATCCTTACCTGG
R:
CGTATGTGGGTGGCTGGTAAT
Band lengths:
167-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)