BtaEX6102837 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011865 | MTA2
Description
Bos taurus metastasis associated 1 family, member 2 (MTA2), mRNA. [Source:RefSeq mRNA;Acc:NM_001075712]
Coordinates
chr29:41641531-41644023:-
Coord C1 exon
chr29:41643956-41644023
Coord A exon
chr29:41643488-41643581
Coord C2 exon
chr29:41641531-41641648
Length
94 bp
Sequences
Splice sites
3' ss Seq
ACCGATTTTTCTCTCCTTAGACT
3' ss Score
9.92
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
Exon sequences
Seq C1 exon
ATTACGTCTATTTTGAGAACTCCTCCAGCAATCCTTACCTGGTTAGAAGGATTGAAGAGCTCAACAAG
Seq A exon
ACTGCAAATGGAAACGTGGAGGCAAAGGTCGTGTGCCTCTTCCGGCGAAGGGACATTTCTAGTAGCCTCAACAGCCTGGCTGATAGTAATGCCA
Seq C2 exon
GGGAGTTTGAGGAGGAATCGAAGCAGCCAGGGGTGTCAGAACAGCAGCGACATCAACTGAAGCACCGAGAACTTTTTCTTTCTCGGCAATTCGAATCATTGCCAGCCACCCACATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011865-'2-2,'2-1,3-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=0.312 C2=0.300
Domain overlap (PFAM):
C1:
PF0142613=BAH=FE(15.6=100)
A:
PF0142613=BAH=FE(22.0=100)
C2:
PF0142613=BAH=FE(27.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGAACTCCTCCAGCAATCCT
R:
CTTATGTGGGTGGCTGGCAAT
Band lengths:
173-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]