RnoEX0056163 @ rn6
Exon Skipping
Gene
ENSRNOG00000019913 | Mta2
Description
metastasis associated 1 family, member 2 [Source:RGD Symbol;Acc:1306743]
Coordinates
chr1:225142368-225144442:+
Coord C1 exon
chr1:225142368-225142435
Coord A exon
chr1:225142714-225142807
Coord C2 exon
chr1:225144325-225144442
Length
94 bp
Sequences
Splice sites
3' ss Seq
TGTTTTTCTCCCTCCTTTAGACT
3' ss Score
11.15
5' ss Seq
CTAGTGAGT
5' ss Score
7.43
Exon sequences
Seq C1 exon
ATTATGTCTATTTTGAGAACTCCTCCAGCAATCCTTACCTGGTTAGACGGATTGAGGAGCTCAATAAG
Seq A exon
ACTGCAAACGGAAATGTGGAAGCAAAGGTTGTCTGCCTTTTCCGGCGAAGGGATATTTCTAGTAGCCTCAACAGCTTGGCGGACAGCAATGCTA
Seq C2 exon
GGGAGTTTGAGGAGGAATCAAAACAGCCAGGGGTCTCGGAGCAGCAGAGACATCAACTGAAGCACCGAGAGCTTTTTCTTTCTCGGCAGTTTGAATCATTACCGGCCACCCACATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019913-'4-5,'4-3,6-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0142613=BAH=FE(15.6=100)
A:
PF0142613=BAH=FE(22.0=100)
C2:
PF0142613=BAH=FE(27.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGAACTCCTCCAGCAATCCT
R:
TATGTGGGTGGCCGGTAATGA
Band lengths:
171-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]