DreEX0047692 @ danRer10
Exon Skipping
Gene
ENSDARG00000013031 | mta2
Description
metastasis associated 1 family, member 2 [Source:ZFIN;Acc:ZDB-GENE-030131-4803]
Coordinates
chr7:17665642-17677340:+
Coord C1 exon
chr7:17665642-17665709
Coord A exon
chr7:17669744-17669837
Coord C2 exon
chr7:17677223-17677340
Length
94 bp
Sequences
Splice sites
3' ss Seq
TTTTCTCTGTTTCCTTTAAGACT
3' ss Score
8.71
5' ss Seq
CACGTGAGT
5' ss Score
9.3
Exon sequences
Seq C1 exon
ATTATGTGTATTTTGAAAACTCCTCCAGTAACCCGTATCTGATCCGCCGAATAGAAGAACTCAACAAG
Seq A exon
ACTGCCAATGGAAATGTAGAAGCCAAGGTGGTCTGTCTCTTCAGGCGGAGGGATATATCTGCTAGCCTGAACACTCTGGCTGATAGCAATGCAC
Seq C2 exon
GAGACTTTGAAGAGGAGTCCAAGCAGCCTTCAACATCAGAACAGCAGAAACACCAGCTCAAGCACAGAGAACTGTTCCTGTCTCGACAGTTTGAGTCTCTCCCGGCCACGCATATACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000013031-'1-3,'1-2,2-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=0.203 C2=0.388
Domain overlap (PFAM):
C1:
PF0142613=BAH=PU(16.3=95.7)
A:
PF0142613=BAH=FE(22.0=100)
C2:
PF0142613=BAH=FE(27.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAAACTCCTCCAGTAACCCG
R:
TATATGCGTGGCCGGGAGAG
Band lengths:
171-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]