HsaEX6024049 @ hg19
Exon Skipping
Gene
ENSG00000170921 | TANC2
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 [Source:HGNC Symbol;Acc:30212]
Coordinates
chr17:61476182-61483638:+
Coord C1 exon
chr17:61476182-61476275
Coord A exon
chr17:61482483-61482616
Coord C2 exon
chr17:61483515-61483638
Length
134 bp
Sequences
Splice sites
3' ss Seq
TCTTTGTTCTCTGCCCTTAGCCC
3' ss Score
9.36
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
ATTGTCTCCTACCTACTTGATCTTCCAGAAAAAGATGAAGAGGAAGTAGAGCGAGCACAGATCAACAGCTTTGACAGTCTCTGGGGAGAGACAG
Seq A exon
CCCTAACAGCTGCAGCCGGAAGGGGCAAACTGGAGGTGTGCCGTTTGCTCTTGGAACAAGGGGCGGCAGTGGCCCAGCCAAACCGCCGAGGAGCAGTGCCACTATTCAGCACAGTGCGCCAGGGCCACTGGCAG
Seq C2 exon
ATTGTTGATCTTTTACTCACCCATGGAGCTGATGTCAACATGGCAGACAAGCAGGGCCGCACTCCCCTGATGATGGCTGCTTCCGAAGGCCATCTAGGAACCGTGGACTTTCTGCTTGCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170921-'23-24,'23-23,24-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.048
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(14.3=43.8),PF0002325=Ank=PU(12.1=12.5)
A:
PF0002325=Ank=PD(84.8=62.2),PF127962=Ank_2=PU(10.8=22.2)
C2:
PF127962=Ank_2=FE(44.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGTCTCCTACCTACTTGATCTTCC
R:
CTTGTGCAAGCAGAAAGTCCAC
Band lengths:
218-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)