DreEX0077231 @ danRer10
Exon Skipping
Gene
ENSDARG00000079097 | tanc2a
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2a [Source:ZFIN;Acc:ZDB-GENE-060130-180]
Coordinates
chr3:22663725-22664248:+
Coord C1 exon
chr3:22663725-22663818
Coord A exon
chr3:22663904-22664037
Coord C2 exon
chr3:22664125-22664248
Length
134 bp
Sequences
Splice sites
3' ss Seq
TATGTCTATCTGTATGTCAGCTC
3' ss Score
6.48
5' ss Seq
CAGGTCGGC
5' ss Score
6.32
Exon sequences
Seq C1 exon
ATTGTATCATACCTACTCGACCTGCCTGAGAAAGATGAGGAAGAGGAGGAACGAGCTCAAATAAACAACTTTGATACATTGTGGGGTGAAACAG
Seq A exon
CTCTGACAGCTGCAGCGGGTCGGGGAAAGCTGGATGTTTGTCGTCTTCTACTGGAGCAGGGGGCCGCTGTGGCTCAGCCCAACCGCAGGGGCATCGTGCCGCTCTTCAGCGCTGTTCGGCAGGGACACTGGCAG
Seq C2 exon
ATAGTGGACCTGCTGCTAAATCATGGCGCTGATGTCAACATGGCTGATAAACAAGGGCGAACACCTCTAATGATGGCTGCTTCTGAAGGACATTTGGGTACTGCAGAGTTCCTGCTGGCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079097-'33-34,'33-33,34-34
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=0.000 C2=0.071
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(28.2=100)
A:
PF127962=Ank_2=PD(24.5=60.0),PF127962=Ank_2=PU(10.8=22.2)
C2:
PF127962=Ank_2=FE(44.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGTATCATACCTACTCGACCTGC
R:
CTTGAGCCAGCAGGAACTCTG
Band lengths:
218-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]