GgaEX0000404 @ galGal3
Exon Skipping
Gene
ENSGALG00000000478 | TANC2
Description
NA
Coordinates
chr27:2528414-2533455:+
Coord C1 exon
chr27:2528414-2528507
Coord A exon
chr27:2532667-2532800
Coord C2 exon
chr27:2533332-2533455
Length
134 bp
Sequences
Splice sites
3' ss Seq
ACTGCCTCCTCTCTCCCCAGCGC
3' ss Score
11.91
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
ATTGTCTCCTACCTGCTCGACCTTCCAGAAAAAGATGAGGAGGAGGTGGAGCGAGCTCAGATCAACAGCTTTGACAGCCTCTGGGGAGAGACAG
Seq A exon
CGCTGACGGCGGCGGCGGGCCGGGGGAAGCTGGACGTGTGCCGGCTGCTGCTGGAGCAGGGAGCTGCCGTGGCACAGCCCAACCGGCGCGGCGTGGTGCCACTCTTCAGTGCCGTCCGGCAGGGCCACTGGCAG
Seq C2 exon
ATTGTGGACCTGCTGCTCACCCACGGCGCCGACGTGAACATGGCAGACAAGCAGGGCCGGACACCACTGATGATGGCTGCGTCGGAGGGACACCTGGGCACGGTGGAGTTTCTGCTTGCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000478-'17-15,'17-14,18-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.048
Domain overlap (PFAM):
C1:
PF136371=Ank_4=FE(50.0=100)
A:
PF136371=Ank_4=PD(27.4=37.8),PF127962=Ank_2=PU(10.8=22.2)
C2:
PF127962=Ank_2=FE(44.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGTCTCCTACCTGCTCGACC
R:
CTTGTGCAAGCAGAAACTCCAC
Band lengths:
218-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]