GgaEX0000404 @ galGal4
Exon Skipping
Description
NA
Coordinates
chr27:2611062-2616103:+
Coord C1 exon
chr27:2611062-2611155
Coord A exon
chr27:2615315-2615448
Coord C2 exon
chr27:2615980-2616103
Length
134 bp
Sequences
Splice sites
3' ss Seq
ACTGCCTCCTCTCTCCCCAGCGC
3' ss Score
11.91
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
ATTGTCTCCTACCTGCTCGACCTTCCAGAAAAAGATGAGGAGGAGGTGGAGCGAGCTCAGATCAACAGCTTTGACAGCCTCTGGGGAGAGACAG
Seq A exon
CGCTGACGGCGGCGGCGGGCCGGGGGAAGCTGGACGTGTGCCGGCTGCTGCTGGAGCAGGGAGCTGCCGTGGCACAGCCCAACCGGCGCGGCGTGGTGCCACTCTTCAGTGCCGTCCGGCAGGGCCACTGGCAG
Seq C2 exon
ATTGTGGACCTGCTGCTCACCCACGGCGCCGACGTGAACATGGCAGACAAGCAGGGCCGGACACCACTGATGATGGCTGCGTCGGAGGGACACCTGGGCACGGTGGAGTTTCTGCTTGCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000478-'28-19,'28-18,29-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGTCTCCTACCTGCTCGACC
R:
CTTGTGCAAGCAGAAACTCCAC
Band lengths:
218-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]