RnoEX6050079 @ rn6
Exon Skipping
Gene
ENSRNOG00000052840 | Tanc2
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 [Source:RGD Symbol;Acc:1309285]
Coordinates
chr10:94105025-94114502:+
Coord C1 exon
chr10:94105025-94105118
Coord A exon
chr10:94113099-94113232
Coord C2 exon
chr10:94114379-94114502
Length
134 bp
Sequences
Splice sites
3' ss Seq
TCTTTGTTATCTGCCTTTAGCCC
3' ss Score
7.53
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
ATTGTCTCCTACCTACTTGATCTTCCAGAAAAAGATGAAGAGGAAGTGGAGCGAGCACAAATCAACAGTTTTGACAGTCTTTGGGGAGAGACAG
Seq A exon
CCCTGACAGCCGCAGCCGGAAGGGGCAAACTGGACGTATGCCGTCTGCTTTTGGAGCAAGGGGCAGCAGTGGCCCAGCCAAACCGCAGAGGAGCGGTGCCCCTATTCAGCACTGTTCGCCAGGGCCATTGGCAG
Seq C2 exon
ATTGTTGACCTTTTACTGACCCATGGAGCAGATGTCAACATGGCAGACAAGCAGGGTCGTACTCCCCTGATGATGGCTGCTTCTGAAGGCCATCTAGGAACTGTGGACTTCCTTCTTGCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052840-'40-45,'40-44,41-45=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.024
Domain overlap (PFAM):
C1:
PF136371=Ank_4=FE(49.2=100)
A:
PF136371=Ank_4=PD(27.0=37.8),PF127962=Ank_2=PU(10.8=22.2)
C2:
PF127962=Ank_2=FE(44.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGTCTCCTACCTACTTGATCTTCC
R:
CTTGTGCAAGAAGGAAGTCCACA
Band lengths:
218-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]