MmuEX6090449 @ mm9
Exon Skipping
Gene
ENSMUSG00000053580 | Tanc2
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 [Source:MGI Symbol;Acc:MGI:2444121]
Coordinates
chr11:105763374-105771640:+
Coord C1 exon
chr11:105763374-105763467
Coord A exon
chr11:105770309-105770442
Coord C2 exon
chr11:105771517-105771640
Length
134 bp
Sequences
Splice sites
3' ss Seq
TCTTTGTTATCTGCCTTTAGCCC
3' ss Score
7.53
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
ATTGTCTCCTACCTACTTGATCTTCCAGAAAAAGATGAAGAGGAAGTGGAGCGAGCACAAATCAACAGTTTTGACAGTCTCTGGGGAGAGACAG
Seq A exon
CCCTGACAGCCGCAGCCGGAAGGGGCAAACTGGATGTGTGCCGTCTGCTTTTGGAGCAAGGGGCAGCAGTGGCCCAGCCAAACCGCAGAGGAGCAGTGCCTCTATTCAGCACTGTTCGCCAGGGCCATTGGCAG
Seq C2 exon
ATTGTTGATCTTTTACTGACCCATGGAGCTGATGTCAACATGGCAGACAAGCAGGGTCGTACTCCCCTGATGATGGCTGCTTCTGAAGGCCATCTAGGAACCGTGGACTTCCTACTAGCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000053580-'23-27,'23-26,24-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.024
Domain overlap (PFAM):
C1:
PF136371=Ank_4=FE(49.2=100)
A:
PF136371=Ank_4=PD(27.0=37.8),PF127962=Ank_2=PU(10.8=22.2)
C2:
PF127962=Ank_2=FE(44.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGTCTCCTACCTACTTGATCTTCC
R:
CTTGTGCTAGTAGGAAGTCCACG
Band lengths:
218-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: