BtaEX6089487 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004249 | TANC2
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 [Source:HGNC Symbol;Acc:HGNC:30212]
Coordinates
chr19:48381933-48390884:+
Coord C1 exon
chr19:48381933-48382026
Coord A exon
chr19:48389668-48389801
Coord C2 exon
chr19:48390761-48390884
Length
134 bp
Sequences
Splice sites
3' ss Seq
ACTGCGCTCTCTACCCTCAGCCC
3' ss Score
9.31
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
ATTGTCTCCTACCTACTTGATCTTCCAGAAAAAGATGAAGAGGAGGTGGAGCGAGCACAGATCAACAGCTTTGACAGTCTCTGGGGAGAGACAG
Seq A exon
CCCTGACAGCTGCGGCCGGAAGGGGCAAGCTAGAGGTGTGTCGTCTGCTCCTGGAGCAGGGGGCAGCTGTGGCCCAGCCCAACCGCCGGGGAGCCGTGCCCCTCTTCAGCACCGTTCGCCAAGGCCACTGGCAG
Seq C2 exon
ATCGTTGATCTTTTACTTACTCACGGAGCTGATGTCAACATGGCGGACAAGCAGGGCCGTACTCCCCTAATGATGGCAGCTTCTGAAGGCCACCTGGGAACTGTGGACTTTCTCCTTGCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004249-'22-24,'22-23,23-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.048
Domain overlap (PFAM):
C1:
PF136371=Ank_4=FE(49.2=100)
A:
PF136371=Ank_4=PD(27.0=37.8),PF127962=Ank_2=PU(10.8=22.2)
C2:
PF127962=Ank_2=FE(44.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCTCCTACCTACTTGATCTTCCA
R:
AAAGTCCACAGTTCCCAGGTG
Band lengths:
203-337
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]