HsaEX6032102 @ hg19
Exon Skipping
Gene
ENSG00000137948 | BRDT
Description
bromodomain, testis-specific [Source:HGNC Symbol;Acc:1105]
Coordinates
chr1:92428275-92433817:+
Coord C1 exon
chr1:92428275-92428503
Coord A exon
chr1:92430184-92430321
Coord C2 exon
chr1:92433703-92433817
Length
138 bp
Sequences
Splice sites
3' ss Seq
GAATTTGTTCAAAACCATAGGAT
3' ss Score
4.85
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
GACATGTACTTGTAGACAGGATTCAAAGCAGTTAAGAATGTCTCTGCCAAGTCGACAAACAGCTATTATTGTTAACCCTCCTCCACCAGAATATATAAATACTAAGAAAAATGGGCGATTGACAAATCAACTTCAGTATCTACAAAAAGTTGTCCTAAAGGATTTATGGAAGCATAGTTTTTCATGGCCCTTTCAACGTCCTGTGGATGCTGTGAAACTACAGTTGCCT
Seq A exon
GATTATTATACCATTATAAAAAACCCAATGGATTTAAATACAATTAAGAAGCGCTTGGAGAATAAATATTATGCGAAGGCTTCAGAATGTATAGAAGACTTCAATACAATGTTCTCAAATTGTTATTTATATAACAAG
Seq C2 exon
CCTGGAGATGACATTGTTCTTATGGCACAAGCTCTAGAGAAGCTGTTTATGCAGAAATTATCTCAGATGCCACAAGAAGAGCAAGTTGTGGGTGTTAAGGAAAGAATCAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137948-'15-11,'15-10,17-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.055 A=0.000 C2=0.110
Domain overlap (PFAM):
C1:
PF087045=GCD14=PU(28.0=68.8),PF0043920=Bromodomain=PU(32.6=43.8)
A:
PF087045=GCD14=FE(28.7=100),PF0043920=Bromodomain=FE(52.3=100)
C2:
PF087045=GCD14=FE(24.2=100),PF0043920=Bromodomain=PD(11.6=25.6)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTAACCCTCCTCCACCAGA
R:
ACAACTTGCTCTTCTTGTGGCA
Band lengths:
249-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)