RnoEX6041434 @ rn6
Exon Skipping
Gene
ENSRNOG00000002073 | Brdt
Description
bromodomain, testis-specific [Source:MGI Symbol;Acc:MGI:1891374]
Coordinates
chr14:3442871-3446662:-
Coord C1 exon
chr14:3446423-3446662
Coord A exon
chr14:3444136-3444273
Coord C2 exon
chr14:3442871-3442985
Length
138 bp
Sequences
Splice sites
3' ss Seq
GACCTTGTTCAAACCTACAGGAC
3' ss Score
7.57
5' ss Seq
AAGGTGCGG
5' ss Score
8.17
Exon sequences
Seq C1 exon
GACATATTCTCGTAGACACCTTGAAGATACCAGGATCTGAAGTAGTTGAGAATGTCTCTGCCAAGTCGACAAATGGCTATTGTTAACCCCCCTCCACCAGAGTACATAAATGCTAAGAAAACTGGGCGGTTGACCAACCAGCTGCAGTTCCTGCAGAGAGTCGTCCTGAAGGCGCTGTGGAAACACAGTTTCTCCTGGCCGTTTCAACAGCCTGTGGATGCCGCGAAGCTCAAGCTGCCT
Seq A exon
GACTATTACACCATCATAGAGACGCCAATGGATTTAAGTACAATTAAGAAGCGGCTGGAAAACAGGTACTACGAGAAGGCTTCCGAATGCGTGGGAGACTTCAACACGATGTTCTCAAACTGCTACTTATACAACAAG
Seq C2 exon
CCTGGAGATGACATTGTGGTTATGGCCCAAGCTCTGGAGAAGTTATTTATGCAGAAGCTGTCTCAGATGCCACAGGAAGAGCAGATTGTGGGTGGCAAGGAGAGAATGAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002073-'5-4,'5-3,6-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.032 A=0.000 C2=0.359
Domain overlap (PFAM):
C1:
PF0043920=Bromodomain=PU(32.6=44.4)
A:
PF0043920=Bromodomain=FE(52.3=100)
C2:
PF0043920=Bromodomain=PD(11.6=25.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGCCAAGTCGACAAATGGC
R:
GCATCTGAGACAGCTTCTGCA
Band lengths:
254-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]