BtaEX6016624 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000047443 | BRDT
Description
bromodomain, testis-specific [Source:HGNC Symbol;Acc:HGNC:1105]
Coordinates
chr3:51584493-51587278:-
Coord C1 exon
chr3:51587081-51587278
Coord A exon
chr3:51586008-51586145
Coord C2 exon
chr3:51584493-51584586
Length
138 bp
Sequences
Splice sites
3' ss Seq
AATTTCTTCTTACACCATAGGAT
3' ss Score
8.21
5' ss Seq
AAGGTCTGT
5' ss Score
6.43
Exon sequences
Seq C1 exon
CAGTTGAGAATGTCTCTGCCAAGTCGACAAACAGCTATTGTTAACCCTCCACCACCAGAGTATATAAATACTAAGAAAAATGGGCGATTGACGAATCAGCTGCAGTATCTACAGAAGGTTGTCTTGAAGGCTTTGTGGAAGCATAGTTTCTCCTGGCCTTTTCAGCAGCCTGTGGATGCTGTCAAACTAAAATTGCCT
Seq A exon
GATTATTATACCATTATAAAAAACCCAATGGATTTAAATACAATCAAGAAGCGCTTGGAACATAAATATTATGTGAAAGCTTCGGAATGTATAGAAGATTTCAATACAATGTTCTCAAATTGTTATTTATACAACAAG
Seq C2 exon
CCTGGAGATGACATTGTTCTTATGGCTCAAGCTCTAGAAAAGCTGTTCAGGCAGAAATTATCTCAGATGCCACAAGAAGAACAAGTTGTGGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047443-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.123 A=0.000 C2=0.126
Domain overlap (PFAM):
C1:
PF0043920=Bromodomain=PU(32.6=42.4)
A:
PF0043920=Bromodomain=FE(52.3=100)
C2:
PF0043920=Bromodomain=PD(11.6=31.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTAACCCTCCACCACCAGA
R:
CCACAACTTGTTCTTCTTGTGGC
Band lengths:
251-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]