MmuEX6019343 @ mm9
Exon Skipping
Gene
ENSMUSG00000029279 | Brdt
Description
bromodomain, testis-specific [Source:MGI Symbol;Acc:MGI:1891374]
Coordinates
chr5:107771039-107774269:+
Coord C1 exon
chr5:107771039-107771278
Coord A exon
chr5:107772572-107772709
Coord C2 exon
chr5:107774155-107774269
Length
138 bp
Sequences
Splice sites
3' ss Seq
AAATCTGTTCAAACCTACAGGAC
3' ss Score
6.67
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
GACATGTCCTCTTAGACAACTTTAAAATACCAGGATCCGAAGTGGTTGAGAATGTCTCTGCCAAGTCGACAAACAGCTATTGTTAACCCCCCTCCACCAGAGTACATAAACACTAAGAAGAGTGGGCGGTTGACGAATCAGCTGCAGTTCCTACAGAGGGTTGTGCTGAAGGCCCTGTGGAAGCACGGCTTCTCTTGGCCTTTCCAACAGCCGGTGGACGCCGTGAAACTAAAGCTGCCT
Seq A exon
GACTATTACACCATCATAAAAACCCCAATGGATTTAAATACAATTAAGAAGCGGTTGGAAAATAAGTATTATGAGAAGGCTTCCGAATGCATAGAAGACTTCAACACAATGTTCTCAAACTGCTACTTATACAACAAG
Seq C2 exon
ACTGGAGATGACATTGTTGTTATGGCCCAAGCTCTAGAGAAGTTATTTATGCAGAAATTATCTCAGATGCCACAAGAAGAGCAAGTTGTGGGTGGTAAGGAGAGAATAAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029279-'6-3,'6-2,7-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=0.000 C2=0.179
Domain overlap (PFAM):
C1:
PF0043920=Bromodomain=PU(32.6=44.4)
A:
PF0043920=Bromodomain=FE(52.3=100)
C2:
PF0043920=Bromodomain=PD(11.6=25.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGGATCCGAAGTGGTTGA
R:
ACTTCTCTAGAGCTTGGGCCA
Band lengths:
255-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: