GgaEX6044270 @ galGal4
Exon Skipping
Gene
ENSGALG00000006031 | BRDT
Description
bromodomain, testis-specific [Source:HGNC Symbol;Acc:HGNC:1105]
Coordinates
chr8:13257524-13259545:-
Coord C1 exon
chr8:13259323-13259545
Coord A exon
chr8:13258348-13258485
Coord C2 exon
chr8:13257524-13257650
Length
138 bp
Sequences
Splice sites
3' ss Seq
TGATTCTTTGAAAAACACAGGAT
3' ss Score
2.54
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GTTAGGTGTGTAATGAAGATCTTGGAACAAGATGTCTCTCCCAAGCCTGCGTCGTTCTCTTATTACTAACCCTCCTCCACCAGAATATATAAACAACAGAAATAGTGGGTGTCAAACAAACCAACTTCAGTACTTACAGAGAGTGGTCATGAAAGCCATGTGGCGACACAACTTTTCCTGGCCGTTTCATCAGCCTGTAGATGCAGCAGCACTGAATCTTCCT
Seq A exon
GATTACTACAGTATTATAAAGAAACCTATGGACCTGAGCACAATTAAAAAGCGTCTGGAACATAATTACTACACAAAATCTGCAGAATGCATTGATGACTTCAAAACTATGTTCTTGAACTGCTACATATATAACAAG
Seq C2 exon
CCAGGTGATGACATTGTGTTTATGGCCCAAGAACTAGAAAAAGTGTTCATGCAGAAAATAGCACAAATGCCACCAGAAGAAATACTGATTCCCGACAAAGGAAAAAGAAAAGAAAAGCTGTCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006031-'3-2,'3-1,4-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=0.000 C2=0.395
Domain overlap (PFAM):
C1:
PF0043920=Bromodomain=PU(32.6=43.8)
A:
PF0043920=Bromodomain=FE(52.3=100)
C2:
PF0043920=Bromodomain=PD(11.6=23.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGCCTGCGTCGTTCTCTTA
R:
TGGCATTTGTGCTATTTTCTGCA
Band lengths:
254-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]