HsaEX6037285 @ hg19
Exon Skipping
Gene
ENSG00000135773 | CAPN9
Description
calpain 9 [Source:HGNC Symbol;Acc:1486]
Coordinates
chr1:230930909-230937518:+
Coord C1 exon
chr1:230930909-230931025
Coord A exon
chr1:230933908-230933966
Coord C2 exon
chr1:230937316-230937518
Length
59 bp
Sequences
Splice sites
3' ss Seq
TCCCCCTTCTCTCCTATCAGGGG
3' ss Score
11.48
5' ss Seq
GAGGTATGG
5' ss Score
8.98
Exon sequences
Seq C1 exon
GCTTTCAGCTGAGCAGCCACCTCCTGCAGCTGATTGTGCTCAGGTATGCGGATGAGGAGCTCCAGCTGGACTTCGATGACTTCCTCAACTGCCTGGTCCGGCTGGAGAATGCGAGCC
Seq A exon
GGGTGTTCCAGGCTCTCAGTACAAAGAACAAGGAGTTCATTCATCTCAATATAAATGAG
Seq C2 exon
TTCATCCATTTGACAATGAACATCTGAGGCTGCCTTGTAGAGATGCAGCCTGCCCAGCTGAATCTTGGCTTCTGGACCTTGACCTTCAGAACTTCTCTTGGTGTGGAACCATTACGCCCAGGGTTCACTCCCCTCTCATCGTCCGGCCTTCTCCCTTCATCTTGATCTGGGAAGAATGAAATGAACTCAGCTACACTCTCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135773-'19-22,'19-21,21-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTCAGGTATGCGGATGAG
R:
GGCTGCATCTCTACAAGGCAG
Band lengths:
132-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)