RnoEX6061175 @ rn6
Exon Skipping
Gene
ENSRNOG00000018480 | Capn9
Description
calpain 9 [Source:RGD Symbol;Acc:70965]
Coordinates
chr19:57376114-57378901:+
Coord C1 exon
chr19:57376114-57376230
Coord A exon
chr19:57377519-57377577
Coord C2 exon
chr19:57378545-57378901
Length
59 bp
Sequences
Splice sites
3' ss Seq
TTCTTCCTCCCTCCCACCAGGGG
3' ss Score
11.33
5' ss Seq
GAGGTATGG
5' ss Score
8.98
Exon sequences
Seq C1 exon
GCTTTCAGCTGGGTAGCCATCTCCTGCAGCTGATCGTCCTCAGGTATGCAGACGAGAACCTCCAGCTGGATTTCGATGACTACCTCAACTGCCTGGTGCGGCTGGAGAATGCGAGCC
Seq A exon
GGGTGTTCCAGTGTCTCAGTGTGAAGAACAAGGACTTCATCCATCTCAACATAAACGAG
Seq C2 exon
TTCATCAACTTGACCATGAACATCTGAGCTTGCACTGACCTGATGCCGTCTGCCCCTCTGATACTCAGCTGCTGGACCATGAACCTCAGAATTTTTATTGGAGGGCCATCCCGCCCATTGCTCTCTCCCCACTCCACACCACCCTCCTTCCCTCCCTGTCGAGATTTAAATCAAAAAGGGATTGGCCATGTTCTCCGATTCAGTGATACTTCTTCTAAGATCATTGCTCCACAGGAACTCATGGCACTGCCTGTGTCTGTGCTCAGGCCTGGGGTTGCTGTATGCTCCTCCCTCCACTGCCCCTCCTCCACCAACCGGAGTCCTGGCTTCTGAGTGCTCCAATCATGCTATCAAGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018480-'21-19,'21-18,22-19=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134051=EF-hand_6=PD(11.8=10.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGAGAACCTCCAGCTGGATT
R:
TGAGTATCAGAGGGGCAGACG
Band lengths:
133-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]