GgaEX1012829 @ galGal4
Exon Skipping
Gene
ENSGALG00000011136 | CAPN9
Description
calpain 9 [Source:HGNC Symbol;Acc:HGNC:1486]
Coordinates
chr3:39840615-39843085:+
Coord C1 exon
chr3:39840615-39840731
Coord A exon
chr3:39841769-39841827
Coord C2 exon
chr3:39842627-39843085
Length
59 bp
Sequences
Splice sites
3' ss Seq
TGTCCTGTTTTTCATTTCAGGAG
3' ss Score
11.49
5' ss Seq
GAGGTATGA
5' ss Score
8.55
Exon sequences
Seq C1 exon
GATACCAACTCAACAACTACCTGCTGCAGCTGATCGTCCTCCGATACTCTGATGAGCAGTTCCAAATTGATTTTGATGATTTTCTAAACTGCCTAATTCGCTTGGAGAATGCAAGTC
Seq A exon
GAGTATTCCAAGCATTGAGTGTGAAAAACAAGGATTTCATTAACTTGAATATTGGCGAG
Seq C2 exon
TTCATCAACCTGGCAATGAACATCTGAGGAAGTCGGATTTGGATGCCAGGAGTCTCTTGTGCCATCGCTGCCATGACTTCTGCCCCAACAGCTGTGATGCCCTTCTCATGCAGACTTCATCAGGAGCTTTTGTGTGGAGGAAGACTCATGCTGCTCGTCTTTCTGGTCTCCAGCCCTGTTGCATTCAGGAGTTCAACAGTCAGATCTCATTTTGTTTTTAATTTCGATAAAAGCTATTGATGGATTTGTTACTGGGAGAGATATTTGGATGGGGCATACATGCCTCTCAAGCAGACTGAAACCGATGCCCCTGAGTGAACACAATCTTTTATGAAATAGGATTGTATTTAGTTTCAGCACAGCACCGTCTACAATGATTAAACATCTTTATTGCTGCTTGGCTACAGATTGCTGTAAGATGCTTTTAAAAATATAAGGTTGCATAAAATTTTGTTCGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011136_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134051=EF-hand_6=PD(9.1=7.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAACAACTACCTGCTGCAGC
R:
CCTCAGATGTTCATTGCCAGGT
Band lengths:
137-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]